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Stanza on iPad

I have just downloaded Stanza for iPad and it is brilliant at opening and reading PDFs. But I noticed that those documents that I downloaded directly to iPad using GoodReader and then opened in Stanza (so no syncing with iTunes at that stage) have created an inbox which is only viewable in iTunes when syncing. This inbox duplicates the downloaded documents, which are listed under the File Sharing window in iTunes. And I cannot delete the inbox by dragging it from the File Sharing Window.

Is there any way of deleting this inbox?

I am using a Mac running iTunes 9 and OS X (10.6.3)